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jts
221 Stars 78 Forks 1.7K Commits 46 Opened issues

Description

de novo sequence assembler using string graphs

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SGA - String Graph Assembler

SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.


For installation and usage instructions see src/README

For running examples see src/examples and the sga wiki

For questions or support contact jared.simpson --at-- oicr.on.ca

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